Lemma/CMakeLists.txt

cmake_minimum_required(VERSION 3.1.0 FATAL_ERROR)

# Bug in CMake on Linux, but Linux, Mac, and Win all support shared libraries, no harm in this, 
# but remove when warning no longer shows.
# Related to calling find_package before a project is created... 
# https://cmake.org/Bug/view.php?id=15999 
SET_PROPERTY(GLOBAL PROPERTY TARGET_SUPPORTS_SHARED_LIBS TRUE)

####################################################################################################
# Lemma versioning, set Major, minor, and patch here                                               #
set(LEMMA_VERSION_MAJOR "0")                                                                       #
set(LEMMA_VERSION_MINOR "3")                                                                       #
set(LEMMA_VERSION_PATCH "0")                                                                       #
set(LEMMA_VERSION "\"${LEMMA_VERSION_MAJOR}.${LEMMA_VERSION_MINOR}.${LEMMA_VERSION_PATCH}\"")      #
set(LEMMA_VERSION_NOQUOTES "${LEMMA_VERSION_MAJOR}.${LEMMA_VERSION_MINOR}.${LEMMA_VERSION_PATCH}") #
####################################################################################################

########################################
#  ##################################  #
#  # Pre-Build checks/ dependencies #  #
#  ##################################  #
########################################

## Options--what do you want to do
option ( BUILD_SHARED_LIBS      "Shared or static libraries"  OFF )

# Disallow in-source build
#if ("${Lemma_SOURCE_DIR}"  STREQUAL "${Lemma_BINARY_DIR}")
#  message(FATAL_ERROR
#    "ParaView requires an out of source Build. "
#    "Please create a separate binary directory and run CMake there.")
#endif()

#------------------------------------------------------------------------------
# Set a default build type if none was specified
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
  message(STATUS "Setting build type to 'Debug' as none was specified.")
  set(CMAKE_BUILD_TYPE Debug CACHE STRING "Choose the type of build." FORCE)
  # Set the possible values of build type for cmake-gui
  set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release"
    "MinSizeRel" "RelWithDebInfo")
endif()

# If CMAKE_BUILD_TYPE is not specified, assume Release. 
#IF( NOT CMAKE_BUILD_TYPE )
#   SET( CMAKE_BUILD_TYPE Release ... FORCE )
#ENDIF()

option ( LEMMA_ENABLE_TESTING       "Turn on unit testing" OFF )
option ( LEMMA_BUILD_EXAMPLES       "Compile example Lemma applications" OFF )
option ( LEMMA_USE_OPENMP           "Use OpenMP in Lemma" OFF )
option ( LEMMA_BUILD_DOCUMENTATION  "Build Doxygen man pages" OFF )

#option (LEMMA_VTK7_SUPPORT "VTK 7.x library for visualisation and grids" OFF)
option (LEMMA_VTK8_SUPPORT "VTK 8.x library for visualisation and grids" OFF)

#option (CMAKE_CROSSCOMPILING "Target different arch than you are on" OFF)

SET( CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_SOURCE_DIR}/CMake/ )
#message( STATUS "MODULE PATH ${CMAKE_MODULE_PATH}" )

SET (CMAKE_CROSSCOMPILING TRUE)

##########################################################################################
## Only look for packages where we build them...this makes finding VTK a problem though! #
########################################################################################## 
if (CMAKE_CROSSCOMPILING)
    message ( STATUS "Performing SuperBuild") #, Only searching in install directory for components." )
    # Kind of hack-ish, CMake doesn't always find this. It's buried in Cross compilation, so, 
    # hopefully anyone doing this can problem solve. 
    #    SET( CMAKE_PREFIX_PATH ${CMAKE_INSTALL_PREFIX}/CMake ${CMAKE_INSTALL_PREFIX}/share/eigen3 )

    #    SET( CMAKE_MODULE_PATH ${CMAKE_INSTALL_PREFIX} )
    #    SET( CMAKE_FIND_ROOT_PATH ONLY ${CMAKE_INSTALL_PREFIX} )
    #    SET( CMAKE_FIND_ROOT_PATH_MODE_LIBRARY  ONLY ) 
    #    SET( CMAKE_FIND_ROOT_PATH_MODE_INCLUDE  ONLY ) 
    #    SET( CMAKE_FIND_ROOT_PATH_MODE_PACKAGE  ONLY )

    #    UNSET( Eigen3_DIR CACHE ) 
    #    UNSET( yaml-cpp_DIR CACHE ) 
    #    UNSET( Eigen3_FOUND CACHE ) 
    #    UNSET( yaml-cpp_FOUND CACHE ) 

    #message( STATUS "........Looking for yaml-cpp in ${CMAKE_INSTALL_PREFIX}" )
    
    find_package (yaml-cpp 0.6 PATHS ${CMAKE_INSTALL_PREFIX}  NO_DEFAULT_PATH ) # Serialisation of classes 
    find_package (Eigen3   3.3 PATHS ${CMAKE_INSTALL_PREFIX}  NO_DEFAULT_PATH ) # Matrix/Vector & Math

    #message( STATUS "yaml-cpp include dir ${YAML_CPP_INCLUDE_DIR}" )
else()
    find_package (Eigen3 3.3 QUIET)     # Matrix/Vector & Math
    find_package (yaml-cpp 0.6 QUIET )  # Serialisation of classes 
endif()

INCLUDE_DIRECTORIES(${YAML_CPP_INCLUDE_DIR})

if (LEMMA_BUILD_DOCUMENTATION)
    find_package(Doxygen REQUIRED)
endif()

## Optional Dependencies
if (LEMMA_ENABLE_TESTING)
    if (EXISTS "${CMAKE_CURRENT_BINARY_DIR}/external/CxxTest/src/CxxTest/README")
	    set (CXXTEST_INCLUDE_DIR  "${CMAKE_CURRENT_BINARY_DIR}/external/CxxTest/src/CxxTest/"  CACHE PATH "" FORCE )
    else()
	    set (CXXTEST_INCLUDE_DIR  "CXXTEST_INCLUDE_DIR-NOTFOUND"  CACHE PATH "" FORCE )
    endif()
    if (EXISTS  "${CMAKE_CURRENT_BINARY_DIR}/external/CxxTest/src/CxxTest/bin/cxxtestgen")
	    set (CXXTEST_PYTHON_TESTGEN_EXECUTABLE "${CMAKE_CURRENT_BINARY_DIR}/external/CxxTest/src/CxxTest/bin/cxxtestgen" CACHE PATH "" FORCE )
    else()
	    set (CXXTEST_PYTHON_TESTGEN_EXECUTABLE "CXXTEST_PYTHON_TESTGEN_EXECUTABLE-NOTFOUND" CACHE PATH "" FORCE )
    endif()
    find_package (CxxTest QUIET)   # Unit testing 
endif()


## Optional Dependencies
if ( NOT Eigen3_FOUND OR 
     NOT yaml-cpp_FOUND OR 
     (LEMMA_ENABLE_TESTING AND NOT CxxTest_FOUND) )
    message ( STATUS "Missing hard dependencies have been found, these will be downloaded any compiled." )
    message ( STATUS "This necessitates a two step build." )
    message ( STATUS "Build these packages first...THEN RERUN CMAKE!" )
    project (SUPERBUILD NONE)
  	# execute the superbuild (this script will be invoked again without the
  	# USE_SUPERBUILD option this time)
  	include (CMake/SuperBuild.cmake)
  	return()                      # stop processing this file further
else()
	#project (Blah)                # <-- YOUR PROJECT NAME HERE
	message( STATUS "Everything was found, happy Lemma-ing" )
endif()

# Mac OSX RPATH is weird 
# enable @rpath in the install name for any shared library being built
# note: it is planned that a future version of CMake will enable this by default
if(POLICY CMP0015)
	cmake_policy(SET CMP0015 NEW)
endif()
set(CMAKE_MACOSX_RPATH 1)

project (Lemma CXX)

if(CXXTEST_FOUND)
	if (LEMMA_ENABLE_TESTING)
        include (CTest)
    	enable_testing()
	endif()
endif()

# Disallow in-source build
if ("${Lemma_SOURCE_DIR}"  STREQUAL "${Lemma_BINARY_DIR}")
  message(FATAL_ERROR
    "Lemma requires an out of source Build. "
    "Please create a separate binary directory and run CMake there.")
endif()

##############################
# required external programs # for downloading packages
##############################
FIND_PROGRAM(HAVEGIT git
  PATHS /usr/bin/ /bin ENV PATH NO_DEFAULT_PATH
)
if(NOT HAVEGIT)
  message(FATAL_ERROR "Lemma requires that git is installed and in the path of your machine")
endif(NOT HAVEGIT)


if(BUILD_SHARED_LIBS)
	set(LABEL_SUFFIX "shared")
else()
	set(LABEL_SUFFIX "static")
endif()

#if(NOT CMAKE_BUILD_TYPE)
#   set(CMAKE_BUILD_TYPE "Release" CACHE STRING
#       "Choose the type of build, options are: Debug Release
#        RelWithDebInfo MinSizeRel."
#       FORCE)
#endif(NOT CMAKE_BUILD_TYPE)

###################
# External Projects
###################

# We don't build VTK, it is too heavy.
#if ( LEMMA_VTK7_SUPPORT ) 
#	#find_package(VTK 7 REQUIRED NO_MODULE)
#	find_package(VTK 7.0 COMPONENTS vtkCommonCore vtkRenderingCore vtkFiltersCore vtkFiltersSources 
#			vtkCommonDataModel vtkFiltersHyperTree vtkIOXML vtkIOImage vtkIOLegacy vtkIOGeometry vtkInteractionStyle 
#			vtkRenderingAnnotation vtkFiltersHybrid vtkFiltersModeling vtkRenderingVolumeOpenGL2 NO_MODULE)
#	set(volumeRenderer volumerenderer.cxx)
#	if (VTK_FOUND)
#		message(STATUS "VTK 7 was found! ") 
#	        include(${VTK_USE_FILE}) 
#		#add_compile_options(-DLEMMAUSEVTK)
#		#target_compile_definitions( lemmacore PRIVATE LEMMAUSEVTK=1 )
#		add_definitions(-DLEMMAUSEVTK) 
#	else()
#		ExternalProject_Add(VTK
#  		GIT_REPOSITORY "https://gitlab.kitware.com/vtk/vtk.git"
#		GIT_TAG  "v7.1.1"
#    	PREFIX ${CMAKE_CURRENT_BINARY_DIR}/external/vtk7
#  		CMAKE_ARGS
#  	        -DBUILD_SHARED_LIBS:BOOL=ON
#	        -DBUILD_EXAMPLES:BOOL=OFF
#	        -DBUILD_TESTING:BOOL=OFF
#		    -DVTK_Group_Web:BOOL=OFF
#	        -DModule_vtkImagingMath:BOOL=ON
#	  	    LOG_DOWNLOAD 0
#	  	    LOG_UPDATE 0
#		)
#	endif()
#endif()

if ( LEMMA_VTK8_SUPPORT ) 
	find_package(VTK 8.0 COMPONENTS vtkCommonCore vtkRenderingCore vtkFiltersCore vtkFiltersSources 
			vtkCommonDataModel vtkFiltersHyperTree vtkIOXML vtkIOImage vtkIOLegacy vtkIOGeometry vtkInteractionStyle 
			vtkRenderingAnnotation vtkFiltersHybrid vtkFiltersModeling vtkRenderingVolumeOpenGL2 NO_MODULE)
	if (VTK_FOUND)
		message(STATUS "VTK 8 was found! ") 
		set(volumeRenderer volumerenderer.cxx)
	    include(${VTK_USE_FILE}) 
	else()
		message( STATUS "External build of VTK 8 has been added, this may take some time to build." )
		ExternalProject_Add(VTK8
  		GIT_REPOSITORY "https://gitlab.kitware.com/vtk/vtk.git"
		GIT_TAG  "v8.1.0"
    	PREFIX ${CMAKE_CURRENT_BINARY_DIR}/external/vtk8
  		CMAKE_ARGS 
    	    -DCMAKE_INSTALL_PREFIX:PATH=${CMAKE_INSTALL_PREFIX} 
            -DBUILD_SHARED_LIBS=${BUILD_SHARED_LIBS} /
            -DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER} /
   	        -DBUILD_SHARED_LIBS:BOOL=ON /
	        -DBUILD_EXAMPLES:BOOL=OFF /
	        -DBUILD_TESTING:BOOL=OFF /
		    -DVTK_Group_Web:BOOL=OFF /
	        -DModule_vtkImagingMath:BOOL=ON /
	  	    LOG_DOWNLOAD 0 /
	  	    LOG_UPDATE 0
		)
	endif()
	add_definitions(-DLEMMAUSEVTK) 
endif()

#######################
# Lemma Configuration #
#######################

#############################
# Look for Ki Ha Lee (EM1D) #
#############################
FIND_LIBRARY( KIHA_EM1D kihaem1d ) 
if ( KIHA_EM1D )
	add_definitions(-DKIHALEE_EM1D) 
endif()

####################
# Look for Boost
####################
option (LEMMA_USE_BOOST "Boost is required by gaussian quadrature classes" OFF)
if (LEMMA_USE_BOOST)
	find_package(Boost
  		1.58.0                         # Minimum or EXACT version e.g. 1.36.0
#  		COMPONENTS math                # Boost libraries by their canonical name
	)  
	if(Boost_FOUND)
  		include_directories(${Boost_INCLUDE_DIRS})
	endif()
	find_path( HAVE_BOOST_SPECIAL_FUNCTIONS "boost/math/special_functions.hpp" ) 
	if(HAVE_BOOST_SPECIAL_FUNCTIONS)
		add_definitions(-DHAVE_BOOST_SPECIAL_FUNCTIONS)
	endif()
	find_path( HAVE_BOOST_PROGRESS "boost/progress.hpp" ) 
	if(HAVE_BOOST_PROGRESS)
		add_definitions(-DHAVE_BOOST_PROGRESS)
	endif()
endif()

option( MSVC_EXTENDED_ALIGNMENT "Turn on MSVC compiler definition _ENABLE_EXTENDED_ALIGNED_STORAGE " OFF  )
if (MSVC_EXTENDED_ALIGNMENT)
    add_definitions(-D_ENABLE_EXTENDED_ALIGNED_STORAGE)
endif()

####################
# Magic rpath flag
####################
SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)

if (LEMMA_USE_OPENMP)

            #    if(APPLE)
            #if(CMAKE_C_COMPILER_ID MATCHES "Clang")
            #set(OpenMP_C "${CMAKE_C_COMPILER}")
            #set(OpenMP_C_FLAGS "-fopenmp=libomp -Wno-unused-command-line-argument")
            #set(OpenMP_C_LIB_NAMES "libomp" "libgomp" "libiomp5")
            #set(OpenMP_libomp_LIBRARY ${OpenMP_C_LIB_NAMES})
            #set(OpenMP_libgomp_LIBRARY ${OpenMP_C_LIB_NAMES})
            #set(OpenMP_libiomp5_LIBRARY ${OpenMP_C_LIB_NAMES})
            #endif()
            #        if(CMAKE_CXX_COMPILER_ID MATCHES "Clang")
            #            set(OpenMP_CXX "${CMAKE_CXX_COMPILER}")
            #            set(OpenMP_CXX_FLAGS "-Xpreprocessor -fopenmp -I/usr/local/opt/libomp/include")
            #" -DOpenMP_CXX_LIB_NAMES=\"omp\" -DOpenMP_omp_LIBRARY=/usr/local/opt/libomp/lib/libomp.dylib ")
            #            set(OpenMP_CXX_LIB_NAMES "omp") # "libgomp" "libiomp5")
            #            set(OpenMP_libomp_LIBRARY "/usr/local/opt/libomp/lib/libomp.dylib") #${OpenMP_CXX_LIB_NAMES})
            #set(OpenMP_libgomp_LIBRARY ${OpenMP_CXX_LIB_NAMES})
            #set(OpenMP_libiomp5_LIBRARY ${OpenMP_CXX_LIB_NAMES})
            #        endif()
            #    endif()

    if (CMAKE_CROSSCOMPILING)
        set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fopenmp")
        set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fopenmp")
        set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fopenmp")
        add_definitions(-DLEMMAUSEOMP) # -DEIGEN_DONT_VECTORIZE )
    else()
        find_package(OpenMP REQUIRED)
        set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
        set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
        set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
        add_definitions(-DLEMMAUSEOMP) # -DEIGEN_DONT_VECTORIZE)
    endif()
endif()

configure_file (
	"${PROJECT_SOURCE_DIR}/config/LemmaConfig.h.in"
	"${PROJECT_BINARY_DIR}/include/LemmaConfig.h"
)
install ( FILES  ${PROJECT_BINARY_DIR}/include/LemmaConfig.h   DESTINATION ${CMAKE_INSTALL_PREFIX}/include/Lemma/ )

include_directories("${PROJECT_BINARY_DIR}/include")
include_directories ("${CMAKE_INSTALL_PREFIX}/include/")
link_directories ("${CMAKE_INSTALL_PREFIX}/lib/")


########################################################################
# Build Modules
add_subdirectory (Modules) 

#######################################################################
# CXXTEST Framework
#if(CXXTEST_FOUND)
#	if (LEMMA_ENABLE_TESTING)
#        include (CTest)
    	#enable_testing()
#	endif()
#endif()

########################################################################
# add a target to generate API documentation with Doxyfile.in 
# ALL make documentation build by default if possible
find_package(Doxygen)
	if(DOXYGEN_FOUND)
	if (LEMMA_BUILD_DOCUMENTATION)
# Custom header and footer option, enable in Doxygen 
#	file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/Documentation/header.html
#        DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/Documentation/header.html
#	)
#	file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/Documentation/footer.html
#        DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/Documentation/footer.html
#	)
	configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Documentation/Doxyfile.in ${CMAKE_CURRENT_BINARY_DIR}/Documentation/Doxyfile @ONLY)
		add_custom_target(doc
			ALL
			${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/Documentation/Doxyfile
			WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
			COMMENT "Generating API documentation with Doxygen" VERBATIM
		)
	endif (LEMMA_BUILD_DOCUMENTATION)
	endif(DOXYGEN_FOUND)

# vim: set tabstop=4 shiftwidth=4 expandtab: