Documentation updates

CMakeLists.txt

 
 set(LEMMA_VERSION_MAJOR "0")
 set(LEMMA_VERSION_MINOR "1")
-set(LEMMA_VERSION_PATCH "1")
+set(LEMMA_VERSION_PATCH "2")
 set(LEMMA_VERSION "\"${LEMMA_VERSION_MAJOR}.${LEMMA_VERSION_MINOR}.${LEMMA_VERSION_PATCH}\"")
 set(LEMMA_VERSION_NOQUOTES "${LEMMA_VERSION_MAJOR}.${LEMMA_VERSION_MINOR}.${LEMMA_VERSION_PATCH}")
 
 add_subdirectory (Modules) 
 
 ########################################################################
-# add a target to generate API documentation with Doxygen
+# add a target to generate API documentation with Doxyfile.in 
 # ALL make documentation build by default if possible
 find_package(Doxygen)
 	if(DOXYGEN_FOUND)
 	option( LEMMA_BUILD_DOCUMENTATION  "Build Doxygen man pages" OFF )
 	if (LEMMA_BUILD_DOCUMENTATION)
+
+# Custom header and footer option, enable in Doxygen 
+#	file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/Documentation/header.html
+#        DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/Documentation/header.html
+#	)
+#	file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/Documentation/footer.html
+#        DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/Documentation/footer.html
+#	)
+
 	configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Documentation/Doxyfile.in ${CMAKE_CURRENT_BINARY_DIR}/Documentation/Doxyfile @ONLY)
 		add_custom_target(doc
 			ALL
 			WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
 			COMMENT "Generating API documentation with Doxygen" VERBATIM
 		)
+
 	endif (LEMMA_BUILD_DOCUMENTATION)
 	endif(DOXYGEN_FOUND)
 

Documentation/Doxyfile.in

 # each generated HTML page. If it is left blank doxygen will generate a
 # standard header.
 
-HTML_HEADER            =
+#HTML_HEADER            = #Documentation/header.html
 
 # The HTML_FOOTER tag can be used to specify a personal HTML footer for
 # each generated HTML page. If it is left blank doxygen will generate a
 # standard footer.
 
-HTML_FOOTER            =
+#HTML_FOOTER            = Documentation/footer.html 
 
 # If the HTML_TIMESTAMP tag is set to YES then the generated HTML
 # documentation will contain the timesstamp.
 # top of each HTML page. The value NO (the default) enables the index and
 # the value YES disables it.
 
-DISABLE_INDEX          = NO
+DISABLE_INDEX          = YES
 
 # This tag can be used to set the number of enum values (range [1..20])
 # that doxygen will group on one line in the generated HTML documentation.
 # JavaScript, DHTML, CSS and frames is required (i.e. any modern browser).
 # Windows users are probably better off using the HTML help feature.
 
-GENERATE_TREEVIEW      = NONE
+GENERATE_TREEVIEW      = YES
 
 # By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories,
 # and Class Hierarchy pages using a tree view instead of an ordered list.

Modules/FDEM1D/examples/CMakeLists.txt

 	FieldPoints
 	PolygonalWireAntenna
 	EMDipEarth1D
+    CircularLoop
 )