/* This file is part of Lemma, a geophysical modelling and inversion API.
 * More information is available at http://lemmasoftware.org
 */

/* This Source Code Form is subject to the terms of the Mozilla Public
 * License, v. 2.0. If a copy of the MPL was not distributed with this
 * file, You can obtain one at http://mozilla.org/MPL/2.0/.
 */

/**
 * @file
 * @date      01/04/2018 04:34:54 PM
 * @version   $Id$
 * @author    Trevor Irons (ti)
 * @email     tirons@egi.utah.edu
 * @copyright Copyright (c) 2018, University of Utah
 * @copyright Copyright (c) 2018, Lemma Software, LLC
 */

#include <LemmaCore>
//#include "RectilinearGridReader.h"
//#include "AEMSurveyReader.h"
#include "EMSchur3D.h"
//#include "LayeredEarthEMReader.h"
//#include "CSymSimplicialCholesky.h"

#include "vtkRectilinearGridReader.h"

using namespace Lemma;

int main( int argc, char** argv ) {

    if (argc < 3) {
        std::cout << "EMSchur3D  <rgrid.vtr>  <1dmod>   <source> " << std::endl;
        std::cout << "\trgrid.vtr - VTK Rectilinear grid file containing 3D conductivity structure.\n";
        exit( EXIT_SUCCESS );
    }

    #ifdef LEMMAUSEOMP
    std::cout << "Eigen is using OpenMP.\n";
    Eigen::initParallel();
    #endif

    ///////////////////////////////////////////////////
    // Read in VTK Grid
    auto vtr = vtkSmartPointer<vtkRectilinearGridReader>::New();
        vtr->SetFileName( argv[1] );
        if (!vtr->OpenVTKFile()) {
            std::cout << "Failed to open VTK file " << argv[1] << std::endl;
            return EXIT_FAILURE;
        }
        vtr->Update();
        //std::cout << *vtr->GetOutput() << std::endl;
    auto gimp = RectilinearGridVTKImporter::NewSP();
        gimp->SetVTKInput( vtr->GetOutput() );
        gimp->ConvertGrid( 0, 0, 2150 );

    //////////////////////////////////////////////////
    // Read in Layered earth, for backgound model
    auto  layeredEarth = LayeredEarthEM::DeSerialize( YAML::LoadFile(argv[2]) );

    /*

    ///////////////////////////////////////////////////
    // Read in Grid
    auto GridRead = RectilinearGridReader::NewSP();
        try {
            GridRead->ReadASCIIGridFile( argv[1] );
        } catch (std::exception& e) {
		    std::cout << "Caught an error opening ASCII Grid file: ";
            std::cout << e.what() << std::endl;
		    std::cout << "enter filename or 0 to exit programme\n";
		    std::string inp;
		    std::cin >> inp;
		    if (inp != "0")
                GridRead->ReadASCIIGridFile( inp.c_str() );
            else exit(EXIT_FAILURE);
	    }

    //////////////////////////////////////////////////
    // Read in Layered earth, for backgound model
    auto LayEarthRead = LayeredEarthEMReader::NewSP();
        try {
            LayEarthRead->ReadASCIIInputFile( argv[2] );
        } catch (std::exception& e) {
		    std::cout << "Caught an error opening ASCII Layered Earth file: ";
            std::cout << e.what() << std::endl;
		    std::cout << "enter filename or 0 to exit programme\n";
		    std::string inp;
		    std::cin >> inp;
		    if (inp != "0")
                LayEarthRead->ReadASCIIGridFile( inp.c_str() );
            else exit(EXIT_FAILURE);
	    }
    */

    //////////////////////////////////////////////////
    // Read in source specification
    auto AEMRead = AEMSurveyReader::NewSP();
        try{
            AEMRead->ReadASCIIAEMFile(argv[4]);
        } catch (std::exception& e) {
		    std::cout << "Caught an error opening ASCII AEM file: ";
            std::cout << e.what() << std::endl;
		    std::cout << "enter filename or 0 to exit programme\n";
		    std::string inp;
		    std::cin >> inp;
		    if (inp != "0")
                AEMRead->ReadASCIIAEMFile( inp.c_str() );
            else exit(EXIT_FAILURE);
	    }

    //////////////////////////////////////////////////
    // And solve

    // Use BiCGSTAB Diagonal preconditioner
    auto EM3D = EMSchur3D< Eigen::BiCGSTAB<Eigen::SparseMatrix<Complex, SPARSEMAJOR>, Eigen::IncompleteLUT<Complex> > >::NewSP();
    //auto EM3D = EMSchur3D< Eigen::BiCGSTAB<Eigen::SparseMatrix<Complex, SPARSEMAJOR> > >::NewSP();

    //auto EM3D = EMSchur3D< Eigen::PardisoLU<Eigen::SparseMatrix<Complex, SPARSEMAJOR> > >::NewSP();
    //auto EM3D = EMSchur3D< Eigen::PardisoLDLT<Eigen::SparseMatrix<Complex, SPARSEMAJOR>, Eigen::Symmetric > >::NewSP();

    // LS CG
    //auto EM3D = EMSchur3D< Eigen::LeastSquaresConjugateGradient<Eigen::SparseMatrix<Complex, SPARSEMAJOR> > >::NewSP();

    // CG...dangerous
    //auto EM3D = EMSchur3D< Eigen::ConjugateGradient<Eigen::SparseMatrix<Complex, SPARSEMAJOR>, Eigen::Lower > >::NewSP();
    //auto EM3D = EMSchur3D< Eigen::ConjugateGradient<Eigen::SparseMatrix<Complex, SPARSEMAJOR>, Eigen::Lower, Eigen::IncompleteCholesky<Complex> > >::NewSP();

    // LU direct
    //auto EM3D = EMSchur3D< Eigen::SparseLU<Eigen::SparseMatrix<Complex, SPARSEMAJOR>, Eigen::COLAMDOrdering<int> > >::NewSP();

    EM3D->SetRectilinearGrid( gimp->GetGrid() );

    EM3D->SetLayeredEarthEM( layeredEarth );
    EM3D->SetAEMSurvey( AEMRead->GetSurvey() );
    EM3D->LoadMeshToolsConductivityModel( argv[3] );
    EM3D->SetResFileName(argv[5]);

    //EM3D->SetCSolver( Lemma::SPARSELU ); // Lemma::BiCGSTAB );
    EM3D->Solve();

    exit(EXIT_SUCCESS);
}