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Akvo
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Surface NMR processing and inversion GUI
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Trevor Irons 40b795b243 Made a few changes for import of T1 pulses. Currenly, a single pulse can be processed easily. If both are processed, the quadrature detection only plots the second pulse. Other things like truncate only apply to the second pulse. 5 gadus atpakaļ
akvo Made a few changes for import of T1 pulses. Currenly, a single pulse can be processed easily. If both are processed, the quadrature detection only plots the second pulse. Other things like truncate only apply to the second pulse. 5 gadus atpakaļ
INSTALL.txt Update install.txt and test of hook 6 gadus atpakaļ
LICENCE LICENSE file change for GitHub 6 gadus atpakaļ
LICENSE Create LICENSE 6 gadus atpakaļ
README.md 1.0.14 5 gadus atpakaļ
_config.yml Set theme jekyll-theme-leap-day 7 gadus atpakaļ
akvologo.svg Pulled SVN into GIT. 7 gadus atpakaļ
bir.sh Pulled SVN into GIT. 7 gadus atpakaļ
publish.sh 1.0.13 update to GUI for formatting 5 gadus atpakaļ
pyuic.json Pulled SVN into GIT. 7 gadus atpakaļ
setup.py 1.2.2 5 gadus atpakaļ

README.md

Akvo

Akvo provides processing of surface NMR data. It aims to be simple to use yet flexible for accommodating changes to processing flow. Akvo is written primarily in Python 3 with a small amount of R as well. The application is written around a Qt GUI with plotting provided by Matplotlib.

The bleeding-edge code may be accessed using the git client

git clone https://git.lemmasoftware.org/akvo.git

or, using our GitHub mirror

git clone https://github.com/LemmaSoftware/akvo.git

Installation

Installation is straightforward. The only prerequisite that is sometimes not properly handled is PyQt5 which sometimes needs to be manually installed.

python3 setup.py build 
python3 setup.py install

Alternatively, release versions can be installed via pip

pip install akvo

Team

Akvo is developed by several teams including the University of Utah. If you would like to contribute, please send an email to info(at)lemmasoftware.org.

Capabilities

Akvo currently has preprocessing capabilities for VistaClara GMR data.

Benefits

Reproducibility

Processing steps are retained and logged in the processed file header, which is written in YAML. This allows data processing to be repeatable.

Open source

Akvo is truly open source, anyone can access, use, and change the source code.

Languages

Akvo is written primarily in Python 3. The graphical user interface is written in PyQt5. An interface to modelling software written in C++ (Lemma and Merlin) is in development.